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Download
Latest command-line version
tgz compressed archive
zip compressed archive
Documentation
Click on files to download.
Archive content
| gene_painter.rb | Main script |
| lib/ | Folder containing library |
| example/ | Folder containing coronin test data |
| tools/ | Folder containing additional scripts, i.e. to obtain NCBI taxonomy dump and YAML files |
| Documentation.pdf | Exhaustive documentation |
| README | Information about installation and usage of GenePainter |
Version history
v.2.0.5, June 2018
- Minor bug-fixes
v.2.0.4, October 2015
- Remodeled yaml-parser
- Genes with different sequences in alignment and yaml are rejected
- Removed now ineffective option --no-best-position-introns
v.2.0.3, March 2015
- Improved matching of alignment sequences and gene structures
- Minor bug-fix in gff-parser
v.2.0.2, February 2015
- Sequence shifts and inframe stopcodons recognized (YAML files)
- Intron positions in alignment: Written underneath first amino acid of next exon (Phase 0) and splitted amino acid (Phase 1 and Phase 2), respectively
- Major update of algorithm detecting common introns
v.2.0.1, January 2015
- Minor bug-fixes
v.2.0, June 2014
- Incorporation of NCBI taxonomy
- Fuzzy intron positions
- Statistics about common introns
- Data and output selection
v.1.0, September 2012
- GenePainter goes public!
GenePainter v.1.0(zip compressed archive)
Documentation v.1.0
Click on files to download.
Sample data from website
Example 1: coronin genes(zip compressed archive)
Example 2: tubulin genes(zip compressed archive)
Click on files to download.
Restrictions and Licence
GenePainter can be downloaded and used under a GNU General Public License.
